scMEDAL_for_scRNAseq / Experiments / AML / preprocessing / sbatch_preprocess_AML.sh
sbatch_preprocess_AML.sh
Raw
#!/bin/bash

#SBATCH --job-name=get_umaps
#SBATCH --partition=GPUp4
#SBATCH --time=4-00:00:00
#SBATCH --nodes=1
#SBATCH --ntasks=1

#SBATCH -o job_%j.out
#SBATCH -e job_%j.err
export CUDA_VISIBLE_DEVICES=0
module load cuda118
module load cuda118/toolkit/11.8.0
module load parallel
module load python/3.7.x-anaconda
# Update the path to the environment you use to run your script
source activate /path/to/preprocess_and_plot_umaps_env

python preprocess_AML.py