An archive of code that was run for the paper: Revealing the Drivers Underlying Distinct Evolutionary Trajectories in Lung Adenocarcinoma
The repository includes a reasonably lightweight subset of the paper's data for the purposes of testing the code. Instructions for running this can be found in Test_bundle/Instructions.txt
The code is optimised for parallelisation on an HPC cluster. With this intended usage, we would expect the example to run in the order of a few hours (dependent on HPC job submission and queue times). If the jobs were to be run in serial on a standard desktop computer, the final stages will take substantially longer, but would likely still be in the order of hours rather than days.
If you have any questions about this code, or are interested in using the methods in your own analysis, please contact...
First author: Christopher Wirth (christopher dot wirth at manchester dot ac dot uk)
Corresponding author: Maria Teresa Landi (landim at mail dot nih dot gov)