Stark-et-al-ICB-2022 / Code / statistical_analysis / step_2 / model jags result simp8.txt
model jags result simp8.txt
Raw
Inference for Bugs model at "Mi model JAGS simp8.txt", fit using jags,
 3 chains, each with 2e+05 iterations (first 0 discarded), n.thin = 100
 n.sims = 6000 iterations saved
             mu.vect sd.vect    2.5%     25%     50%     75%   97.5%   Rhat n.eff
Loc[1]        1.7578  0.0636  1.6357  1.7152  1.7561  1.7987  1.8836 1.0009  6000
Loc[2]        2.0004  0.0723  1.8605  1.9519  1.9997  2.0488  2.1448 1.0011  5600
alpha[1]      2.4774  1.9406  0.4054  1.6605  1.9451  2.5491  8.2065 1.0010  6000
alpha[2]     -0.1491  0.0736 -0.2925 -0.1987 -0.1493 -0.0998 -0.0033 1.0009  6000
alpha[3]      0.1513  0.0753  0.0059  0.1009  0.1504  0.2015  0.3050 1.0009  6000
alpha[4]      0.2300  0.0432  0.1464  0.2012  0.2298  0.2583  0.3140 1.0010  6000
alpha[5]     -0.3614  0.0579 -0.4774 -0.3986 -0.3596 -0.3227 -0.2512 1.0016  2400
alpha[6]      0.2399  0.1017  0.0171  0.1795  0.2472  0.3051  0.4266 1.0010  6000
alpha_mean    1.8791  0.0569  1.7699  1.8408  1.8781  1.9171  1.9937 1.0009  6000
beta.rock     0.0079  0.0040  0.0003  0.0053  0.0079  0.0106  0.0160 1.0009  6000
beta.rockveg  0.0031  0.0013  0.0002  0.0024  0.0032  0.0040  0.0056 1.0010  6000
beta.season  -0.1491  0.0736 -0.2925 -0.1987 -0.1493 -0.0998 -0.0033 1.0009  6000
beta.svl     -0.0600  0.0096 -0.0793 -0.0662 -0.0597 -0.0536 -0.0417 1.0016  2400
beta.veg      0.0574  0.0108  0.0366  0.0502  0.0574  0.0645  0.0784 1.0010  6000
delta        -1.9102  0.5587 -2.9395 -2.3117 -1.9217 -1.5355 -0.7715 1.0017  2100
p.val[1]      0.0000  0.0000  0.0000  0.0000  0.0000  0.0000  0.0000 1.0000     1
p.val[2]      1.9553  0.2956  2.0000  2.0000  2.0000  2.0000  2.0000 1.0036  5900
p.val[3]      0.0427  0.2890  0.0000  0.0000  0.0000  0.0000  0.0000 1.0075  3000
p.val[4]      0.0000  0.0000  0.0000  0.0000  0.0000  0.0000  0.0000 1.0000     1
p.val[5]      2.0000  0.0000  2.0000  2.0000  2.0000  2.0000  2.0000 1.0000     1
p.val[6]      0.0363  0.2671  0.0000  0.0000  0.0000  0.0000  0.0000 1.0011  6000
tau          14.3831  2.6797  9.6129 12.5012 14.1998 16.0746 20.1554 1.0022  1300
deviance     12.3672  5.2662  4.4360  8.5350 11.5721 15.3952 24.4689 1.0009  6000

For each parameter, n.eff is a crude measure of effective sample size,
and Rhat is the potential scale reduction factor (at convergence, Rhat=1).

DIC info (using the rule, pD = var(deviance)/2)
pD = 13.9 and DIC = 26.2
DIC is an estimate of expected predictive error (lower deviance is better).