Chimeras / Scripts / Human_Mouse_Separation / main_script.sh
main_script.sh
Raw
#order the scripts are run:
# Prepare for STARsolo
generate_fastq_lists.sh
genome_index.sh
arrayRunSTARsolo-onlyCB.sh

# for the humans
filter_fastqs_human.sh
arrayRunCellranger_human.sh
stageout_cellranger_human.sh
stageout_fastqs_human.sh