#!/bin/bash --login #SBATCH -J bbtmtest #SBATCH -p multicore #SBATCH -n 2 #SBATCH -t 2-0 #SBATCH -a 1-2 #SBATCH -o /yourFolder/logs/%A_%a.out #SBATCH -e /yourFolder/logs/%A_%a.err set -euo pipefail module purge conda activate xtpy311 # Get the Nth line from a file based on array task ID sampleID=$(awk 'NR==ENVIRON["SLURM_ARRAY_TASK_ID"] {print $1}' samplelist.txt) ssDPCIfolderpath='/Data/dpcInputs' dpcoutfolderpath='/Data/dpcOutputs/' outpath4in='/Data/timingOutputs/' python3 bbdpctiming.py "$sampleID" "$ssDPCIfolderpath" "$dpcoutfolderpath" "$outpath4in"