Sachs (2005) protein signaling data — Sachs2005.txt

Citation

If you use these measurements, cite the original study:

Sachs, K., Perez, O., Pe'er, D., Lauffenburger, D. A., & Nolan, G. P. (2005). Causal protein-signaling networks derived from multiparameter single-cell data. Science, 308(5721), 523–529.
DOI: 10.1126/science.1105809

BibTeX:

@article{Sachs2005,
  author  = {Sachs, Karen and Perez, Omar and Pe'er, Dana and Lauffenburger, Douglas A. and Nolan, Garry P.},
  title   = {Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data},
  journal = {Science},
  year    = {2005},
  volume  = {308},
  number  = {5721},
  pages   = {523--529},
  doi     = {10.1126/science.1105809}
}

License and redistribution

The flow cytometry measurements are from Sachs et al. (2005) and the associated Science article and supplementary materials.

The MIT License in the root of this repository applies to the project’s own code only, not to this third-party benchmark file. The authors of this repository do not assert a separate open license on the Sachs data; if you redistribute the file or publish work that uses it, follow the policies of the original publication, any data-use agreements you accepted when obtaining the file, and your institution’s requirements, and cite the paper above.

Use in this repository

• File: exp/Sachs2005.txt (tab-separated continuous values, 11 protein / lipid columns).
• Notebook: causal_comp_analysis_application.ipynb (Experiment 2).